Scaffold Ga0209297_1004863

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1004863
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6976
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F095472	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10048631	F095472	GAG	MATNWPLKVEVDCPEPRPGLGRVCVGADGTSWDRANSTGWFDSVTNTAMPAPLPVTEAWSSTYSGLYARVPRSAYTLVTGSVWKQMEINAAGDYYLTATTLGTANAEYVKTTASYVANQGWYISAYVPTWVDKSALPFLRVVWGYGSASTVEMVFRG
Ga0209297_100486310	F012219	AGGTGG	MNLQNFRIEKEAAPSTDWRVFGDIKDDNGNLLGTFGVNGTSINVWWVTQDESFQYPILQQFAVIMAQEIANGLTE
Ga0209297_100486311	F001733	GGAGG	MNSISIKRLVIVVIVAFTAAFTSVFGDGVRTSEAHDLAELGAVLALYGSKAIAAGVSAAVSSVLAFLTMPFSGTQANALKVGK
Ga0209297_10048634	F033435	GGAG	LSSIFDDIPKLEGRPNYSVDIERFIGAPGSFVFREPKASDLFPRPEVQKQLKIAYPEFPDQMLQILMIMARCYVIQAGDGEINPGRRFAQLARDRSDIYLYVVAEFAKAFPIDFAAAVDEVPND
Ga0209297_10048636	F031872	GAGG	MVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQDDTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQTVSSTTPPFFLNRSSVSSSIDVSQDGRVDNGISQLYVATISP