Scaffold Ga0209297_1003904

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1003904
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7925
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F002038	Metagenome / Metatranscriptome	600	Y
F005588	Metagenome / Metatranscriptome	395	Y
F014261	Metagenome	264	Y
F015597	Metagenome	253	Y
F019449	Metagenome / Metatranscriptome	229	Y
F021107	Metagenome / Metatranscriptome	220	Y
F053888	Metagenome	140	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100390411	F000957	N/A	MTDFRHLDAMRHLIEELFFVNERIMTGDIVSAKAAIASTNVKKILTHYHEALSEEGATMISLQVYIAAGGWIGISYSFELDGCNFEGSQVPRRI
Ga0209297_100390412	F005588	N/A	MPNPLAHSPDMITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLDDILDIQRSLIDEQAAEIRLLKARVADQNDAIVRGTAITPDAYPHD
Ga0209297_100390414	F053888	N/A	MNQSSVSFIKGLDGRVLTLARPVLPHAARRLVSVIPQLNALNAAGKSQADAAEAMGVSVGCIRNWITLASIPWSNLNKRGPYNINR
Ga0209297_100390415	F014261	N/A	MKTLIALIVFSWLAVVTFCGPELARAINGAEPVKAKVHHTR
Ga0209297_100390418	F019449	N/A	VTTETFTTIVVPGIASAAYLSASIACFCVHRPALGVMWLCYSVANICLLSTVLRK
Ga0209297_10039042	F098917	N/A	MTNREYLRNILTQLGGEVAALRPTPDDSHRIAGDDLYHLQLAINEAAAELERLSADDIEEAYHIKPIYDRLKAVVAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEANPSDDDAAL
Ga0209297_100390421	F021107	N/A	MITILVSLLIGFLGGFYAGIKNAKSAKVEKAVDILKALKGKD
Ga0209297_10039043	F002038	AGGA	MADIPAGIERIARTVQGQYALLLLLDGYPYVEMTARKHADFLSDLGLWKRKTHPSLARSQVRFFTLAPTGELKELTFTR
Ga0209297_10039044	F015597	N/A	MSDPIEDAFKSLHQGNLLAAKDARIKQLEERLEGMREAGDAIWYCVRHAQRIDADALIEAIEEWQEARNHG