Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1003593 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8267 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002044 | Metagenome / Metatranscriptome | 599 | Y |
F002162 | Metagenome / Metatranscriptome | 588 | Y |
F006539 | Metagenome / Metatranscriptome | 370 | Y |
F042333 | Metagenome | 158 | Y |
F094891 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209297_10035931 | F094891 | N/A | IKITEKEFNAITGEETITERDETAAEKKQREAFAKEVAARQAEAQTKQAAKQAIADRLGLTADELTLLLG |
Ga0209297_100359310 | F006539 | GGA | MIETTTPWIVLYCTLGYFIAWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDAKRDQVFDYDKN |
Ga0209297_100359314 | F002162 | N/A | MPNYDYICDREGTSIVLDLPMQHEIPLCQVCGFELTRVYTAVPSIFKGTGWACKDG |
Ga0209297_100359315 | F042333 | GAG | MDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPVIRCNECGSWQFVDHPCHTCSLVNS |
Ga0209297_10035938 | F002044 | N/A | MANTRKTTKRTKINRRVVRHTPDPTKIDAHYIALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD |
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