Scaffold Ga0209297_1003593

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1003593
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8267
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F006539	Metagenome / Metatranscriptome	370	Y
F042333	Metagenome	158	Y
F094891	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10035931	F094891	N/A	IKITEKEFNAITGEETITERDETAAEKKQREAFAKEVAARQAEAQTKQAAKQAIADRLGLTADELTLLLG
Ga0209297_100359310	F006539	GGA	MIETTTPWIVLYCTLGYFIAWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDAKRDQVFDYDKN
Ga0209297_100359314	F002162	N/A	MPNYDYICDREGTSIVLDLPMQHEIPLCQVCGFELTRVYTAVPSIFKGTGWACKDG
Ga0209297_100359315	F042333	GAG	MDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPVIRCNECGSWQFVDHPCHTCSLVNS
Ga0209297_10035938	F002044	N/A	MANTRKTTKRTKINRRVVRHTPDPTKIDAHYIALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD