Scaffold Ga0209297_1003396

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1003396
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8509
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (45.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037191	Metagenome / Metatranscriptome	168	Y
F037196	Metagenome / Metatranscriptome	168	Y
F074866	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100339619	F037196	N/A	MTNTTITLEQFHNLLAAAYAVCVNDTLYFVGYDTEDSPYIADNDGQDYVDLSTVDGDIEVDDYAVSFWVQGNPIRMIFLNIAIIDL
Ga0209297_10033966	F037191	GAGG	MTVAEWIEKLKEFPQDKEVKLTDGHKYHFYEGDFYFQLFEDVDGSTCVDIGIGGFEVEE
Ga0209297_10033969	F074866	GGAG	MKTCHNCKHYKDYDGVLDWINSRIFQFPTLQKCYHPDRWKNVDYVNGTTRPYGICSVERCTGNCRKEGNNWEGETTLSF