Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1003322 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1003322 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8604
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (58.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8604

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (58.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001164	Metagenome / Metatranscriptome	760	Y
F001459	Metagenome / Metatranscriptome	690	Y
F003112	Metagenome / Metatranscriptome	506	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F014487	Metagenome / Metatranscriptome	262	Y
F020886	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10033221	F001164	N/A	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAELNLYPRLATSGTIPLRVVEKLKCLTRTNYIV
Ga0209297_100332211	F012569	N/A	MSRALDKFQGQYGFSVGTQGTATAGYWAIQMLADTTFSAISGKFDGTLTGVTIGSGNIIYGEFNSYTAGTGRVIGYIAG
Ga0209297_100332212	F010603	AGGAG	MANEFVRSTRKAKGKAIRFDTQSQTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0209297_100332217	F001459	N/A	MRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGKKLSLILLNLTLRQNASAVMKKTEELAEACGRANGYRACVATLESLASQKLNSAIPGYGDGSDEPVAD
Ga0209297_10033225	F020886	GAGG	MRLSILRLHSDIWRVGVVSLDEVSDLRDRVANVSERLARMEERQMTLYSMIERSLAFHGDVANRLGALETLKTKVLAVAGVIGLACSMAWDVLKNRFAN
Ga0209297_10033226	F003112	N/A	MWLTNLSLRFLMTEQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDREEVTDAVVHLAVALRYLEGRGRES
Ga0209297_10033227	F014487	N/A	MPLLLLALLLCSCSPKKTDNTGLPRYSDMGAASDAGAVSSGNVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1003322

Overview

Ecosystem & Geography

Associated Families

Sequences