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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027733 Open in IMG/M |
| Scaffold ID | Ga0209297_1003250 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8719 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (56.52%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028087 | Metagenome / Metatranscriptome | 192 | N |
| F057002 | Metagenome | 137 | Y |
| F063629 | Metagenome | 129 | N |
| F079388 | Metagenome | 116 | N |
| F096673 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209297_100325010 | F063629 | N/A | VYMNTVVSLPQTSSFDKLMAEFGTIKILCEKIGVKYVTAYAWKMRNGIPKKWHTAIIEASEGRLTENDLG |
| Ga0209297_100325015 | F079388 | N/A | MEKTKVINKKCLEAFNKLSEPVYHPQEYFMLGWNAAIDALSAEFSRKWEMNELEDIDFIVQPEQKPMHDDE |
| Ga0209297_100325020 | F057002 | N/A | MRSALTFTKERLHPSDYAGKRFDQALHNKYDPPARKAISEWMQMKWGLECRENPNVYGVDLIAYRAGNPVGFVEVEVRGWVYCHHTTIHIAHRKAKLFQQDLPVLFFALTHDLSHAYWLKAELVKKCPLIEVNNREVPSGEFFFDVPVSWFKYVNLTDPF |
| Ga0209297_100325023 | F028087 | N/A | RADSRKKARQVNPDNTTIIEAVDEWQRLLIAKQSETRIQEQIISKYGSKSWEEIQGIKARKQWEDRRDKHLEQHDRRVMKSVMLLCYIFSAWIAYECTWGRWK |
| Ga0209297_10032504 | F096673 | AGG | MSFTIMQHDGMKVIMWFADVDILLISIKNNPKDHYHRNT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |