Scaffold Ga0209297_1003248

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1003248
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8721
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F001781	Metagenome / Metatranscriptome	635	Y
F007921	Metagenome / Metatranscriptome	342	Y
F009685	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100324810	F007921	N/A	MINWLVNRIFRWDSLRHAIFDEVRLYQSIDRSMWEHEKEGPTNLTWSEGDRWYGWTYNTNSKRYYFDDIGNESLMGLWEDQWLMESDSLEKSIVNG
Ga0209297_100324821	F000852	GGA	MTTKREYLKQQGITVGVRGRFSGAAKVVLDQAIAKGVTFTAEVPVKKAK
Ga0209297_100324822	F009685	GAGG	MKMSDEYIDEILNRAQKLLWGGSETENIEAHNLISNLIRERVEQTDLT
Ga0209297_100324823	F001781	GGAG	MKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYRQNCTIDEMWDHLCEAVEAGQGFSLEYGAEQHQDDVLDWMMSRDYIVDTMFEEDEEDKDEDE