Scaffold Ga0209297_1003070

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1003070
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8998
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000706	Metagenome / Metatranscriptome	926	Y
F004050	Metagenome / Metatranscriptome	455	Y
F007223	Metagenome	355	Y
F025974	Metagenome / Metatranscriptome	199	Y
F031078	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100307010	F025974	GGAG	MPNPTRIEVNCTTGEVLEIELTDAEVAELAYQAELAADAKAEEDRIAAQRALDKAALLERLGITADEAALLLA
Ga0209297_10030704	F007223	AGG	MFDPSFGDMVVMIVLSGLYFHLGRIVGIRVGYLQGRKSVRDYYASKERVRV
Ga0209297_10030706	F004050	GAG	MAKKKVIDLDTYSQLDQYAICMHEFYKSLRRAGFAVDMCLAIITDRDAYPDWLMPSIPDRVDRLPYEDDDED
Ga0209297_10030707	F000706	GGAG	MTQTDFFNLYFASLAVVGGLSGFVITHLLSEIKRLHARVDEIYNILLER
Ga0209297_10030708	F031078	AGGTGG	MEAIIYATLGLVAIPVIRTAIKSYRAKKAVADIVVDAIEAAVDTVEKK