Scaffold Ga0209297_1002800

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1002800
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9476
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018529	Metagenome / Metatranscriptome	234	Y
F023790	Metagenome	208	N
F043930	Metagenome	155	N
F056374	Metagenome / Metatranscriptome	137	N
F058129	Metagenome	135	N
F059905	Metagenome	133	N
F071154	Metagenome / Metatranscriptome	122	N
F088880	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100280011	F056374	N/A	VLPLSHGLLDWLQMKARKTIEIEVIKERVNRFLAHSRDEDSQVRKGHHGLATMLMMEAGAYKGFHYLRKEDVAPGMTFGVEWVDGKPVFHDETRTYFI
Ga0209297_100280014	F071154	N/A	MEIKFKDGNLQIDLHSLLDNIREEDLSEFFESISCNDKVIKHVTDQILDRWTENVYSGSSNTSASAEVYFGLDKAWREVAKRSGEVAKREIERLEEALKRRNEEYYNLVNEYSRKNRDGRYQD
Ga0209297_100280021	F088880	N/A	MRIHTKDTAFIAMFVLVIICAIAWGLYIRSTNNTIKVIDGCQYLKNYNGHGWNLTHKGNCTNIIHYKK
Ga0209297_100280023	F058129	N/A	MKVYLVYNNSDRDGGVNAIFDTERKALDFVIKEYYSAPYFNNIDSILLDNLAREYVDIDIVL
Ga0209297_100280025	F043930	N/A	SAPVRLAKMNKLEKARWRNILRKAAKANRLFKKGYLVFDHHGIPFEGFKFENGLLYEGSENYRSIWISKDKPWSQHLQTPIKEFNAKRFDKWTAVHPKHIEKI
Ga0209297_10028004	F023790	N/A	MKMLLQSKRFETTTILEDNKTIYVVTTRGELFPDNTQSKAITFDFQRLDKKKLTKKEEKSGDDVFNSIIKDKR
Ga0209297_10028005	F018529	GAG	MNLQEFKQIFSEYGGGFVSPEQINELAEFAPDLPLGVKVGYGSRFATTAKHFKLDLENNTKYHLDVHNVEQYVRDVFVPCSTYDEVRRIFGWNNKE
Ga0209297_10028007	F059905	N/A	MKNDCKNAIRYLVSKTYEVYAKYKNSISVLSLPGESWEFENHILNHQDYRNCIQQIPMDLQLICFEKSFRSYSVSNLLDKNKDNNTQYINDKVTLDHLKLLKNKNKFLWFDFCGNPSVESLQFLNSCFVQGEKICAIFTFTLLWRKRDNLPIEIDNLSQNNTNEEAVEHYFKQALKDLNAKSEGYSNKITLLWKYTYISSRAPMICLCITNDSTLKNEPALKGQGELLKPDQEITPAAQTKGDLDLGEELVCKMKTSKRSLAAHKAWVTIRANKAKATLAMAQ