Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1002743 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1002743 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9571
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9571

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F004955	Metagenome	417	Y
F037735	Metagenome	167	N
F063702	Metagenome	129	Y
F090083	Metagenome	108	Y
F105190	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100274313	F090083	AGCAG	MGATASIQVDGVKEAVKYLNKVEPGYRKAYVANMKQVAQPMTDAMKASYSESGFPSGTQRNWTSKGVKKFPLTTAGAVKGVSLRVNNKKQGAAFSVMQKNPAASIFDIAGRSNTNPLGSAFDTKFGRSASRVIWPVFEAKISDISANIQKVVDDVIAEVNKNFKVI
Ga0209297_100274316	F063702	AGG	MKYTIISERIGTVGEEFVPGLGTNVEALLKHGFIESDEPANDSPALKSAKTKAPAKKD
Ga0209297_100274317	F037735	N/A	MTVYTDLFNEAIDDLSATLTTVTGLRVVYDSEKINPPCVFIDAPSFEAFNYNIVKMTFSVKVITLGPANLDGLRNVLSMSAALLASNVAVTTGRPGYLPIGGQTFAAYDLSIEMQAQTG
Ga0209297_10027434	F105190	GGGGG	MNCELCKTELTAYDIRMQDLLQGICLNCGKAGDWLHMTPEESRRCAELHQWANMTNEQRTAYDRNRGN
Ga0209297_10027435	F001332	AGGA	MKGKPDMTTHDMIAAIAKAEIAMKSAQWQIERQAEDVAMLRKALVELAYVAEENGVYISRLTKSTQDTIVAIRLGGFK
Ga0209297_10027439	F004955	GGA	MTFNPSKALIALVGLVCMTVLIAVGSIDQDQGLPIITMIVGYSVGNGMAALTNKTVEPILKKKGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1002743

Overview

Ecosystem & Geography

Associated Families

Sequences