NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1002241

Scaffold Ga0209297_1002241


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1002241 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10792
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (61.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060635Metagenome / Metatranscriptome132N
F100478Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100224117F060635GGAGGMIISKTQLKIIRTATDEILLNKYDYYSSMPIRTLTALLNLKAIKQELDRRNLLDLKINEDQYEMEAASL
Ga0209297_100224118F100478AGGAGGMNNTYKFKCTGSIEAGYSVKVQVSRTGATKEEALENLLTVFPKAEPVFPSKDFYYSEVA

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