Scaffold Ga0209297_1002176

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1002176
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10993
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F017452	Metagenome	240	Y
F022373	Metagenome	214	Y
F033418	Metagenome / Metatranscriptome	177	N
F075854	Metagenome	118	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100217611	F022373	GGA	MKTKAVIEFTYPDDEDNLLFALKGPIMYKALTNIKMAVTGEFTHKADMNAVLKRVRDLTDQIFEELGE
Ga0209297_100217612	F090062	AGGAG	MQTQQLRQKARQIYNNHLVPDHTNQHNQRKWVRSVLQLGDKWLVFKPMGRLNENQSSH
Ga0209297_100217628	F033418	AGGGGG	MKQRVYTVGVGDQVRLVRASNRRQAIAHVSTGLMTIRVATQEDIINQLDKGVPIENYTPPEQIELEL
Ga0209297_10021763	F009801	AGG	MTESQKEYCEFIGSRSFEGDGGWSYEVWQAAQQAVFKRVASRFLGYGDIDYTGKEIAKYINFLAEQNVPEQKAP
Ga0209297_10021765	F075854	AGGAG	MPRPQPTMPIKARQVKMSDVEWLMFKELGGAEWLRKYVKQKAKFPAQYYLTFKQEKTND
Ga0209297_10021766	F017452	AGGAG	MIHTDEDDEFARIEHENKMKTGQPYHFDIYVSPSQRNFVLEEVAKEFEAMKAFGDTAHSFAAFVRGMKK