NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1002134

Scaffold Ga0209297_1002134


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1002134 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11126
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017479Metagenome / Metatranscriptome240Y
F022650Metagenome / Metatranscriptome213Y
F045099Metagenome / Metatranscriptome153N
F063695Metagenome129N
F077012Metagenome117Y
F085703Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100213412F017479AGGAGMNELKTAAGSWARAFLVAVISMAAAGVTDPKALIAAGVASILPPVLRYLNANDTALGLKK
Ga0209297_100213419F045099AGGMAQLKITFADGKVVQGEITPLIEYTFEQHYNMGFHKSFREEERQTQVYFLAHEVVKRLGEPVDARLETFIGTLKSVEVLDSDPLA
Ga0209297_100213422F022650GGTGGMPTPAITTLRTTLATALVDNTRWQTFAFPPPVVLANSVIVSPDNPYLTPNNNSQISISPFANFKLIITCPLFDNEGNLNGIEDFVVRVFNLLAASSFTYNVSAISAPSVLNAASGDLLSCEMSVSILTSWG
Ga0209297_10021347F077012GGCGGMSNQDKMLLICIVGIFISMSVVAFDAYRLGKERGIREGWHRGRSLSRQEFWEE
Ga0209297_10021348F085703GGCGGMATIEVYYAPVVEKYYCLYCSFDMTETMVCTDCNEYKSAVTLEEFIEMNGHYPKLRAVK
Ga0209297_10021349F063695AGGMKITAKDFDALTDTAMGWKGNDWEIQSDRFLDKVSFDWAVCYWVDSAAALILARTFLEDNGHEFEESYDDNMESYILLTNYDMYEMAVSA
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