Scaffold Ga0209297_1002091

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1002091
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11269
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029046	Metagenome	189	Y
F066470	Metagenome	126	Y
F075715	Metagenome	118	N
F075748	Metagenome	118	Y
F093236	Metagenome	106	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100209111	F075715	GAGG	MNKEYLIAKANLCSELAQEQLANGDNEEGVKNLKRMIRALEEINMINYLEERRGRE
Ga0209297_100209114	F066470	GGAGG	MTEIARRIESAKRSAVVYRNYRRARERAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTGQSMDLNSSTPPTGGRERGQASSDPDEGNNGGEA
Ga0209297_100209115	F093236	GGAGG	VRIKHLSLVTSVPSVTMGSKETVPSPYGPVRAGLTTSPITQDQRLSELLSSLESAVENLNYKSFTLYDMLNTAIEEISALLSNTQTEEGGTDV
Ga0209297_100209117	F100350	AGGCGG	MIYAFKCDCGSTREIEQSIHAEIINPICTDCHQSMSRSWSSPAITFKGPGFYSNGG
Ga0209297_10020918	F029046	GAGG	MQLQEVDTVQDLKIWVEENMQGAEVYEDMYGTLVIRTNLISTMGGYLHEREGE
Ga0209297_10020919	F075748	N/A	MLSKREILEIIESTASFNAHIEGMDTLNGQALGLVMDVAGVDGEEWSDEECLEIIKEIVDHANNYRNTHDWED