Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1001576 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1001576 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13216
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13216

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (78.95%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F013618	Metagenome	269	N
F017290	Metagenome / Metatranscriptome	241	N
F053248	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10015761	F053248	N/A	ALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD
Ga0209297_100157615	F017290	AGGAG	MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNDRQVYQTMDGEAYKTTNISATFQLDMLADWGKTSSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPSAGGSGVDAQTVSFTFTVSKGAVVETFS
Ga0209297_100157619	F013618	AGG	MTVFTPDWKLTINAVEYTNVAISDIAHQAGREDIYSQPNPSYIQIELVALNNENYNLEINDGITLQVKDSTNTYRTLFGGNITDITTEVATASSIAETFTYTILALGSLAKLPKVIYNGTLAKDDDGDQIYELLSELFLNNWNEVPAAETWSGYDPTTTWANAENIGLGEIDRPGVYELENRTADPDTTYNIASLIANSALGVLYEDNEGRISYADTTHRQNYLANNGYTEISANTAIGAGLKVLTRGADVRNEIILNYGNNYGSQKTAIDLTSIATFGYRGETLNTVLHDATDAQAVADRFIALRSYPRALFDSITFPLTNSAIDDADRDALLQIFVGQPMRITDLPVQIAPTSQFEGYIEGWRWSTRFNELFLTINLSPIEFSQVALEWNQVSGSEAWNTLSAILTWENAIGAVA
Ga0209297_10015767	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVIVEPSTIKCDTCNDDRLLHEGDLLRCYVCHTINRIPYPVSKDLNA
Ga0209297_10015768	F002162	AGGA	MPNYEYECDREGLSIVLHLPMEHEIPLCQGCGFELSRVYTAVPAIFKGTGWAGKGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1001576

Overview

Ecosystem & Geography

Associated Families

Sequences