Scaffold Ga0209297_1001563

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001563
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13300
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.70%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019447	Metagenome	229	N
F036695	Metagenome	169	N
F049433	Metagenome	146	N
F049442	Metagenome	146	N
F082686	Metagenome	113	N
F083782	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100156311	F036695	N/A	MEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVNNKGQRGDGERMLYENNFDAYKLSETIIKKILRPLGLLKTISWGVLIVIDASGNRLVEHSMIKN
Ga0209297_100156314	F049442	N/A	MNKENLEQGLTKLLKTFFTKKYYRDFSDLTVVLNEYEEDADDVDDEGNWSSAESYYFTVYSNNFNGSQPELELYNLARELFGNIIGSKNWIDIEFKNYEN
Ga0209297_100156315	F049433	N/A	MKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQKEQDVEQINDPKIINAVNKVLKKLMEESPKFSTDDTLFSLIEKGDLIKAYRLHRNLNAAVNYVDYELLDDMLNNSETKDSIVKLLPNIKSLLTNYFS
Ga0209297_100156319	F082686	N/A	MGRLILTEDDKNDIKLQYQGSVDKKFYDFLKANVEVESRNVDFFDKPFVLMYVNGKSRLLNNSKKYLVNVLLNAYGDDFPNLNDASKRLTAKKYIDELKKQYFYED
Ga0209297_100156326	F019447	N/A	MKNISKEKLVQALKILYKLWKREHDTDSDWPSKHYIEWEAGVPYNFFKKYSKQLGLGNEADDYYYWMNALEENEDNLDNETLTVDNVIVPKYYTFDVETYEDRVEQVHVTYEGQVEGYFNEDQLNRSFYELGQGEVFDYYDFSETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLL
Ga0209297_10015633	F083782	N/A	MRYIISETQLDMIIPTPLKRRLDGLQELMYDVMMNNGMSLDADEYNDVEDFVNYVIDIMMYDIFPHTDYEEIPTYEKILIHLLGDKIREFWNENQ