Scaffold Ga0209297_1001454

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001454
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13795
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F032955	Metagenome	178	Y
F040522	Metagenome	161	N
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100145413	F011742	AGGAG	MQTIEFVPFEWDNADFNPEIDRIEVDYEWHEADDSVGLIAYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIQRNDKEIADERT
Ga0209297_100145419	F046258	GGAG	MKLLTIAMRQVLSYFEIVTLQPSLPILLRDKIPARMTLPTLSITDPKFVYKNASCTDITHTFQKAKDERLQRLRNDADSNRAKDQSTGEQVSKQKLRRVHG
Ga0209297_100145420	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPDDIADAIHDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTPWVDDIEELQEFRNLRIERVQKSLDERKITAAKMDGPFQQMFDE
Ga0209297_100145421	F009140	GGAG	MRLNLTHRTLLKRLSNGPRTMLEMTHSHTDNNSVSFHYAKYLPELERFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIESGSIREPYDGKELRRNISRRGCYDFLKYPSRFGDNQIYKV
Ga0209297_100145425	F032955	GGAG	VNKNEAHHLLDRRKQGFAVPLYIVNRALLVSGDISMACSPCQAARVESTGMAQGAGTGEMPNIPMAWDFDRFNQHHESPQ
Ga0209297_10014544	F040522	N/A	MANGCVAAIRKGCELYKEVKGTVAAAQKTVKEVTAIAEEVGGFFGFFKKKKPSPTAPIAQAKAKKSEAEVWDEGRVVADLAANLSQFFKVQQQLADHIREEEEKSKSVYDPNQNIMESALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVIIIAEQEEARLAQEKKQREVEWQRRKVISAIQDKAIYGAVCLVFVLYLILFFSLLTMDRKLRWGF