NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001436

Scaffold Ga0209297_1001436


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13878
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002433Metagenome / Metatranscriptome559Y
F005503Metagenome / Metatranscriptome398Y
F011152Metagenome294Y
F044361Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100143610F044361AGGMTQWAPVWKVLIAGIEYTDIVLANLSISSGRTNIYTQAQAGYCTINLINLDLGAITAEINDAVSIQVKDTAGSYVPIFGGSIVDVAVTVSQTGSVAITQEITITALGALARLQKALTNGVLTKDYDGDQIYTILEDLLVNNWSEVPAALTWANYTPATTTWATAENTGLGEIDRPGNYELANRGSSQTITWNLVADLATSGLGYLYEDASGLISYADSTHRSTYLATNGYTELDANQALGRGIKIQTKAGDIRNDVSIVWKSGTQTATSAASIALYGKLAQQITTSLEHSADALSQANFYLTLRAQPQAFLESITFALTNPEVDNADRDALINVFMGQPISLANLPANMQSGNFLGFVEGWRFQASFNELSVTLLVSPLPFSLQAMEWQDVSVAERFNTLSGTLDYAHALVVN
Ga0209297_100143615F002433N/AVSVGEWTAVSGLVLAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEARLDQLLLEFALKK
Ga0209297_100143616F005503N/AMSLCIWEHSTRLPREQKMTSGEIGLFLFMCLACILWAIVSYTMGYKEGHKEGYQRGRAVGRHASSQAVAK
Ga0209297_100143619F011152N/AMTISAADEWAIHKRAVDVVFSYSGQLGTTIRYNSKLNNHEQVSEYAESLGAEMIVARYFGLDYDINLSNGKRGADVGQGLEVRWTSYVGGNLIVYPNDRDTDIAVLVVGKSPVYYIAGWLPVAFARRKRFKNPRQDSWWVDQANLNPIDTLIRSEYATAAI

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