Scaffold Ga0209297_1001329

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001329
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14410
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F010237	Metagenome	306	N
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F023058	Metagenome	211	N
F041766	Metagenome	159	N
F047052	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100132910	F023058	N/A	MAGVAVIGSGNYDLEIDTGYMWDAFTLDDDLKGELNNTEYVLNGVSQYASVMDGTIGLTAKRGRQNTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANNQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEQLSSVRFNDLLDLPEVAYTGTRSIETGVATLGGAAAYTVANGTSVAGYANKINEAEQGRIFVDREGTITFQKRLGTTLGVPVAEFHDDDTNIGYSAIDISFQADTVVNRASIQHAGATSPQVAEDLVSQAAYLVQTKSITDSLLHNDAAALTLAEYLISPDPEARFNFLGTEFPGLSTADQETLALLDVGDLINVQKSITTSAGPSQFAQDLTIEGLEHRLTLSSGHAVTYYTAPTTIVYELILDDITYGTLDTNNVLG
Ga0209297_100132915	F041766	AGGAG	MTEPKVFIYEVGRCNLDNGQEILVQIFRHEDTHTIIRAQIAFRTLAGDSWGVPTELRFEK
Ga0209297_100132917	F000722	N/A	METLEPSEVTEEPYPEIGITEETRQMYPENYSDKYNKVFKEFLDDIVRPHHVARPIDRLDDHEILLDELTIIYDAHMTIGGEQNRFNASVIRAAINCIRAYSA
Ga0209297_100132918	F011919	AGG	MNDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSVSAALNALPKSGSKRRKVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATELERPTIAGNMAIVWKAR
Ga0209297_10013294	F013988	AGG	MASYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITNVDATFNGTYIVYALPQYAFMGVDDEGDLLFDPLVTIPNQVLYAKTASDVARTAASGTLTITQTCTWVTSAMLEDWLGIGTATAADAAFLTICASACSQFAWRRRMESGYIDSLTTVPSQDVLLGTQMYGGALYRQRGSVDQFASFQNMGVTPVSGLNGMIRQLLGIDRPQVA
Ga0209297_10013295	F010237	AGG	MAVPNYTDLFNEGFDDLVAKLSTVSGLQINNDPRNITPPSCFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVSTVVQT
Ga0209297_10013297	F047052	AGGA	MKIKLTLTRGDKKETLITNLFAISEWERLENRRVSDGRGIGASDMACWAYIMLGIKGETLPATWREWLKANPDVEIGVEDATDVNPTDAATGDNSLNL