Scaffold Ga0209297_1001262

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001262
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14716
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y
F005562	Metagenome / Metatranscriptome	396	Y
F016968	Metagenome / Metatranscriptome	243	Y
F034929	Metagenome	173	N
F048988	Metagenome	147	N
F071244	Metagenome	122	Y
F084244	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100126214	F005562	AGG	MTRPNIQIDDEVREMTEEEYEALLATGWTEGTDDN
Ga0209297_100126215	F016968	AGAAGG	MTISNPPKALIALVGLICLTLLMALHAIEEATGTGLIGSILGYAIGNGIAARSGQPVQPIIGKKEQPE
Ga0209297_100126216	F048988	N/A	MTNRPYEYYPAWDGKVASPGILKFVELCKARWATNCLGTYVHRNMNNNIKPPQLSVHATGAAADIQYKNEAQARLIWDWLLGKSTVAGKAVEHSALLGIQEIHWYAFGTYGAGYRCSRGEGKTGVKIFTATDNAGSYNGTPNWLHIEISQTMAKDPVKLAKAWDAIPYP
Ga0209297_100126217	F004670	AGGA	MSRMKDYLLEDLPLFRGSDPETSRQVNPVRVGTHRAVLLEQYFYATLGLTDEEAGARAALAGHDIKGYWKRCSDLRTIGLIEDLGIRRGLTSGSQGIVCAITQKGMDIVKGWA
Ga0209297_100126218	F034929	N/A	MGLFQGCQPILETLMIPTWGYVALRSKDKKTMVQVFTDLSTGLIVYTQVCQRAASWHSWGPPTEVERVD
Ga0209297_100126220	F005027	AGGA	METSTGELIAKLMNLSNQLAIELRFNESSLVLEVVGLLHSLPTIAERNRNGWHPSFNTSGPSKGITYISTVKQNNE
Ga0209297_10012626	F071244	AGG	MAYTIISDLVGVPGDEFIPADGINIDALIWGGFIKSDKTPTKSAKTEETSPEE
Ga0209297_10012629	F084244	N/A	MSVNVGVEFTGLKVALGELNQLDKSLRRQITKDFKAIVQPVVQKAQFDLPSGAPLSGMARSWKGASGADIMSWQDAQVKRNIKAFTNAKKVRSSPTGNLQNVGVFGIRWAGPQATIFDMAANGLLSRNLTARYGQPSRVIYRAYEAASDQVERQVQQLVNRVMMLTGRQGRL