Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1001260 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1001260 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14740
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (17.86%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14740

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (17.86%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F013186	Metagenome / Metatranscriptome	273	N
F017298	Metagenome / Metatranscriptome	241	Y
F019139	Metagenome / Metatranscriptome	231	Y
F072337	Metagenome / Metatranscriptome	121	N
F074877	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100126010	F010918	N/A	MKRYKITYNYFEGGKKMIGTRILEALDKEHALQLMAMWPRLILKVETL
Ga0209297_100126011	F072337	GAG	MKKYRVWLEDSVEPEGGSWWQCYLGTDGKLHDYIYTDEHSDTLQWYIDHGYKVEEVK
Ga0209297_100126024	F013186	N/A	VKGILSIAVLNCIRLKRSTKVDSLENASVHQLGGGYGPRTLKRGMKRALDKYISSNYAEVRAYTSYFLSKMGSYIDADTVINNSYLHVVNIDGDPDKVKGYLLNTIKYQILWSTSKSHRDDKITAIEHPNTEPVDDDDLVHKLREDRAYSFNKGLIEIYRNEITDKIQLIVFEAYIDKGYITSRAMAIYFGITHTSAYYLIKELKQNINKLQYRYETEPSY
Ga0209297_100126025	F019139	N/A	MKTKNEYLGQYITTYNGNYENTIEVTEEMAKEHKYYTSIGLGYLFEESTPKVKYKGVENEKAD
Ga0209297_10012605	F010620	GAG	MRHLLPLLILSLLFSCSDAKKAQYHYKKALKYGLELVQDSDTIRIISVDSFAVILNDTIRYEKIITTKDTIISFKNVYIPKTRWQTKIEYRYKTQILKQDVLKYKYIYKTEKKQKAKTNWMLLVWGFIIGVLLSFVTRLLLKLYL
Ga0209297_10012607	F074877	N/A	MTTEQMKATILLYSIELRDEYNEMVGAFGHTDPAAQRLQTKYATLLVLIEKLGLDENY
Ga0209297_10012609	F017298	N/A	METNENTFIPTTFSLKRKMQWWREQSCDGDKGGSFNLELYLDYLSEQDFNEIKQEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1001260

Overview

Ecosystem & Geography

Associated Families

Sequences