Scaffold Ga0209297_1001239

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001239
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14885
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F003067	Metagenome / Metatranscriptome	509	Y
F005088	Metagenome / Metatranscriptome	412	Y
F007027	Metagenome	359	Y
F046904	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100123917	F002269	GGCGG	LSAQLKAAALSYVRAALSCVGALYLSGISDPKVLANAFLAGLIGPLLKALAPNEKQLGIGAK
Ga0209297_100123918	F003067	AGG	VSQAQAYIAVALGIATLSGLMAGLVNHLVKYYLSELRQDGNGGHNLVGRVERIELRVDRIYEMLLEDRLTR
Ga0209297_100123919	F046904	AGG	MNSLDLIVVGMVCLFMGLFIWAAYEMGYKVGLGEGYLRGRNIAKALREAEAAK
Ga0209297_100123923	F007027	AGGCGG	MSKSIRFECRSCKKITEQIERIVTDNLPPNVKVLQCKVCSKMSVCLLVDYADV
Ga0209297_10012399	F005088	N/A	VGRGSFGYLVAQLAVETGIPPQFLLDLDADMFKNMLKVLNDRAKEMQNANRSKGRR