Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1001021 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1001021 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16532
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (48.15%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16532

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (48.15%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F012335	Metagenome	281	Y
F013396	Metagenome	271	N
F031467	Metagenome	182	N
F051896	Metagenome / Metatranscriptome	143	Y
F101057	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100102111	F101057	N/A	MANAKIVNTPSQAIPQYGAPHTQVTIGATAGAVLGSLTLNAGTTHVLVQFTGANARVTFDGTSPTTSKGFVYADGSTAYLTRNMASAAKAIRDDSTDVVLEIQELNFL
Ga0209297_100102121	F012335	N/A	MPKRKISDLSKSVAANANNVGNFIERRDPALAIKALEMLAEGESFNSINKKLGMKWETVARLKARHKMALNERRASLAEDALDIVEGLRLLQKEKMRMLAEDPEQLARTNIRDLTLPWGIANDKFLSAMGENRVVVEHKTSAPSLEDAMKAIEQARANMKASSIEAVVTEIKE
Ga0209297_10010213	F051896	AGGA	MNYSRNAFSDILAVVSASSSIAAWQEQLDWALRIIASLLAITAGVYSIISRRKSRNKSSN
Ga0209297_10010214	F031467	N/A	MDLSTLLAGPLGGVLGLGGAIFQKWLSMKEAKDSHAMKMEELKVVSQIDLQKADINLRQTTEETNGVLFGKAIDAQAALRPSSSIVTDIISLFRPGLTLALWVSSTVLSVCYRNEQPELMNFIITSTFGMFSISVGYWFGVRTEYKMAIRNVK
Ga0209297_10010217	F013396	N/A	VTLQRSLLLGLLALGLVVILALALRSERVLVNGLPPRIIVNSQVEAQEMAGALAVGVLGTGSMAPYIPSTPNGADPLKTIAAYAVVNTNLTYKDITPGALVIYSINYVKGSNTMHQAALLDASGWIMTGLGNKEYENRVRVTSNNFVGIVSKVYVWKP
Ga0209297_10010218	F003579	N/A	MTIPIAPYTMGSPAQPKVGTQFEVRYINYTGVTAVADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDATFAGVLAVNAGFELPTE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1001021

Overview

Ecosystem & Geography

Associated Families

Sequences