Scaffold Ga0209297_1001006

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001006
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16779
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (71.43%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F003393	Metagenome / Metatranscriptome	489	Y
F009531	Metagenome / Metatranscriptome	316	Y
F009882	Metagenome / Metatranscriptome	311	Y
F009885	Metagenome / Metatranscriptome	311	Y
F012455	Metagenome / Metatranscriptome	280	Y
F015434	Metagenome / Metatranscriptome	254	Y
F018352	Metagenome / Metatranscriptome	235	Y
F020910	Metagenome / Metatranscriptome	221	Y
F023275	Metagenome / Metatranscriptome	210	Y
F068817	Metagenome	124	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100100612	F012455	N/A	MIKEIKNKIIRIQELRRSNAATAILNKKKYSRKIKHKNKLQ
Ga0209297_100100615	F000447	AGGA	MGFIEFARINNEGVSWVDLSEATPDELLTLELGLFQEGAL
Ga0209297_100100618	F093770	AGGAG	MITLKHSVNLITEIDEHKMPDHLLSTIVNLSEAQLELILRQTFTAALLGEGVLDKFNEGNSWATLKIGDN
Ga0209297_10010062	F009885	N/A	MTASEWAGFVLTLLSIGAIVLSGIRWYVKVQIKPIREAVEDIRSETKTNGGTSMRDEIKAIKKEQEDAKQLRKATSDKLDHMYEVLLDFVARSK
Ga0209297_100100621	F018352	AGGA	MGKYKETITNILTCSYCYGQGWQFAGNEVDYDVWACECNPYNIPADEIQEYHQLFKTKEN
Ga0209297_100100625	F003393	GAGG	MAATIMNMEYVKVDVLTSGQLEVDDLIQVGDEVVSVVEIISLPDGYTIEIINDFGEREVIEVGEYQQFDLMMLQ
Ga0209297_100100629	F000684	AGGA	MTLQGYTYQLGDLFTTSKTGVTGRIVKFSPINSKLTRISLQLANGSRRLAMVSTTK
Ga0209297_100100630	F009882	AGAAG	MGSELQDAVTIDKLEVPYNSNLLVTYKAIPDTYAAPEEPTYLTSKVTEIEWELHNGRTNRKSLQNLQGTVNSLEDLIVEWYDPNYSKEEVLVALCEHFGIDPVKQIEVQGTVTFTGTINIPMSEIADFDLSNVSIEAELSSYDYDADLTVDEVTVEDAY
Ga0209297_100100633	F009531	N/A	MTLTAEIYEMNYACSPGGVDCWEATIQGYGTSTTVSDFKTAGKALNYVIDKYPNEVLNLTVMSLPAYEKTMTSYVD
Ga0209297_100100637	F020910	GGAG	MQNWAKYTFVCDPDECDSLLEFTARDGYGFPNGVVRMHCPCGREMIYIKVEDIESRFYEPVIKVTPPKVVKINSNPYN
Ga0209297_100100647	F068817	N/A	MSNVDDFLKDPWKHFNEMRKTPHVCDYNYIVDSIGGQPAFFEVCKYCLDTSAVIEMNNE
Ga0209297_10010065	F015434	GGAGG	MESKYPNSWNRHTPKGMNLVDETNKSAKCCDTCECGQTEEQKFNKLMETQTSFEE
Ga0209297_10010066	F023275	GAG	VLTTTAQPVINMGILDNLEYSMADDDGMPNKTVTDAIKELLEDPEHQALMERLKYMEEHG