NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001004

Scaffold Ga0209297_1001004


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16798
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (72.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F002598Metagenome / Metatranscriptome544Y
F006385Metagenome / Metatranscriptome374Y
F009885Metagenome / Metatranscriptome311Y
F010684Metagenome / Metatranscriptome300Y
F021109Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100100411F000868N/AMTTTKGNSMSFLENENEMVIDATYSEIGAMLVEDWVNANLDEGQLFADFRFAEMSDNNYLKGRFNQFYDLKPGNQYYLECEEN
Ga0209297_100100423F002598GAGGMATKLYTIQDLLIGKNYRSRNRNFEGEIISATPRPAIWYGENTEAYVVEVYDRTLRNKFATVAVKVGE
Ga0209297_100100424F006385N/AMILDTGTLIAIVIALAGSITVMCLFWKQNIEQQKEIRRLQVALRDERNK
Ga0209297_10010043F010684AGGAGMPNYEVEVIFEPTGSFMNFTYEAESDNETDLCNEVLNQLSIVSWKVDE
Ga0209297_100100430F021109AGGMNTLNRIQAEQALARHEAHEKAMLKSPWIRESVEAYRSADEAQIATVEEIRKKWYGF
Ga0209297_100100436F009885N/AMYNSVIMTATDWAQFILALLSIGAIIIGAIRWYIKIQIKPIAEAVEDIRAETKTNGGTSMRDEIKSIKLEQESAREKRKATSDKLDHMYDVLLDYVSRSK
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