Scaffold Ga0209297_1000997

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000997
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16815
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.33%)
• Novel Protein Genes: 24
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Associated Families: 24

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F006547	Metagenome / Metatranscriptome	370	Y
F007113	Metagenome / Metatranscriptome	357	Y
F007690	Metagenome	346	Y
F010916	Metagenome / Metatranscriptome	297	Y
F013298	Metagenome / Metatranscriptome	272	Y
F017485	Metagenome	240	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F024555	Metagenome / Metatranscriptome	205	Y
F025032	Metagenome	203	N
F027416	Metagenome	194	N
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y
F038242	Metagenome	166	N
F053288	Metagenome	141	N
F054034	Metagenome	140	N
F084228	Metagenome	112	Y
F084236	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100099710	F019478	N/A	MELKIKNTDRMVGTMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWVEVRKDGRMDSDGDWVYSLNYMRCNQHSITAKWFGDWKNVTKTFGDALKKQF
Ga0209297_100099712	F024555	N/A	MLTIKNIEKLYKLNVSNWRIGKVETLNSSYLIQLKKYNSIETKQVNIERTPIGEGDTALYELWFWDDGKPIRRLLRKCDFELGPPYVIKNIENMMNLK
Ga0209297_100099713	F038242	N/A	MLTIKNIKELELNFCHQRGLKRITETTNALGEHFYCFNFGPISDGKGWNKETEVRLGRDINQRGYQIFVMGLQMSTRYFVSIDDIKSKDGLVLAISKVLAQAKWWWENEAI
Ga0209297_100099714	F007690	N/A	MLTIKNIDKLVNQPIWDGWEVNDIYKGGHNDTYIFELVKRKSLPMHNGLCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0209297_100099715	F018001	N/A	MLTIGNIGDLKGAQLNDWKVLDAGEDIRAELGKNIYILTFGRLDRDGRVLDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDTIVWPAVNIRDKDVFFGRILYKINEEYYKRK
Ga0209297_100099716	F084228	N/A	MLTIQNVTKLAGKRIFGGWVVRDMNCHPTQNKYMFDIHCMGPLGNTIDRCTVSLNRIGQLQREMGKPDYMVYFINYNGEQTKVCVTKDWILNPENFISQLKYIINEYHNKR
Ga0209297_100099717	F038234	N/A	MLTIKNISSLKGKYIGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDRFIRFLIDELI
Ga0209297_100099718	F017998	N/A	MNLERLDLEKYEVLELERNRTIADPLYQQWMSELGVSSSYSDREGIIRANELNNQYTYSVLAENKSTKFSVSSILSILK
Ga0209297_100099719	F037728	N/A	MKRLKITNFTKRVMEIHSDYFMIKYCSDSGDKYLMGIDTNDVVSFKRLEPKHYKMAIDKAPNEDGNYHIWLWDMESNISYPMSIDRDELSNSSTFTKFLNHMLKLANNGDFSGDTGNRVD
Ga0209297_10009972	F025032	N/A	MEGESNVDKFTFKQKDAGGVRPSYQNTKLVKQGTSKDYVKYNVMVMGKFGGTIYYNKTDKSIIASGGESNTTFAPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0209297_100099721	F031098	N/A	MKTYYDIAIHTATKDVVTIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR
Ga0209297_100099723	F010916	N/A	MVVDTIKSDLYNLIQKHDWSYMMSDSHSVWEAGMIEDKEIQAKIHALIGIHREDADELYVFIKYMAGSDYTDSDKNGNGLKYRVINSWFKPYIGEVK
Ga0209297_100099725	F007113	N/A	MKIRLELTPEQLKTVEIALCELFNSDGWTWHRSMEENDKIADRAQYLLHVIESYNKNNKK
Ga0209297_100099726	F003291	N/A	MSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVIARGNGKMGVAEYKMSEAQLDAMYESDVRAHS
Ga0209297_100099727	F001754	GGTGG	MTLSLCSKGDGKIPPYQMIKNYNMNTIYNNFAPSKMSNNPKFSVMVEFTDFLGNQHRIVCNNRRKLAEANEFLKMFKTESTKINKILGEYPVVMGQFPKKYHKEIKMELASAGFGSVSKFLIK
Ga0209297_100099732	F013298	N/A	MNIREFYVKNYPSDDMGKGINPEATFDGLVHALSNCQDVYEYLYVYDSIIRERLFEKLSLILNCEYEVIYQRWLSPIKKPLIKK
Ga0209297_100099734	F000785	N/A	MKFDCTRLMRWAEEKLGPSKCTAIAFTWESDEESCGWYDWDETIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYKKQK
Ga0209297_100099739	F017485	N/A	MNNELKRKDILEGITFILMIVATLGMFCLLYEVTELRELTKSASNFRTIRK
Ga0209297_100099740	F054034	GGA	MLTISTFKKLEGLVLMDGLKVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTSAMTEFISIKTINTLDRMREQLIYIKEKYKTK
Ga0209297_100099741	F084236	AGG	MLTINNQYKIVAESFVVSKNGLNEHWVVDDITETPYVYHIRVLRKVGIFDTIERTIRVNREKNKLEMYSVHITAAGHIIDKDQIRVGNIQTTEGMLNELKTIMEFI
Ga0209297_100099742	F027416	N/A	MLTIENIQKLEGLKVGANGKVWKIIRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIKRAVERQDMVDVYNFLRLIKKEIERAVC
Ga0209297_10009975	F022886	GGA	MITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHRGEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVKV
Ga0209297_10009976	F053288	N/A	MITIQNYNSDVGHGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLIHRNKLKSKKRAKHFPISGDLHEVYIQDMVSDKWRRTVNLAKTSLNKSAFYNWVESVIDDEYGLPF
Ga0209297_10009978	F006547	N/A	MKWIFIFLFPVLVSAQIYDTTYQMIYYQKSLIKKGKVELYGYTSYDLWWADESGIGLLYTLPNRRKKKTKRK