Scaffold Ga0209297_1000901

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000901
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17987
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F025981	Metagenome	199	Y
F040396	Metagenome / Metatranscriptome	162	Y
F045546	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10009011	F040396	N/A	ASGLAQASGVFDPRAANGRLSGKNKALAICEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA
Ga0209297_100090111	F008401	N/A	MEPKTLLTIAETAKLLNCSSGFVRKRIALSEANQQGGWPKTLYINLQPNGAKSLFRVDKEALQTFLRSEGEEANIEEQNAVASSVCSL
Ga0209297_100090118	F025981	N/A	MSIYSVEEKINFPLKETLAILRSIDISLQVLANTQSGGVTTAFISKKAMAERLGVNPVALDKLVYQGLTSKGASGLVEGRHYCKLDPAENNTSNFLYDSAKVLADAWNSFQNYNA
Ga0209297_10009017	F001215	AGGAG	MASTSTNKSPCLIDRPFLRGARINNGTTVVDPTNPAFSDLVQLVRVGDLPTEDAALVEDIFVVSNEGYPNTGGIRTCELIFYVYAPNQSSPSTSTALMLSKVEVGLSGATEGMIQHLELPAINAPVPGVGDTSLLRPIEVGKGEGLYLEKGYILCAGYRGAGPSAVAGGLSPSGITIWAQGGFY
Ga0209297_10009018	F045546	GGCGG	VSRRKGSDNFNFKNKIGIDSVKQISSIKGSDNPKQLLDPLPFERRFRPAVGTKDFSVLSDYNYASLWARWRRGYELSMYTQGASSGLVYSSFKYYVSGTAGVGGYIPGIFFVYPTTRADTRMHMVGIRPRDTFNFLDFGISVAEVTKYDESTYAVKLSQKFGSPISYFHGEVLSNRFNSDGTTKTYGYNNYTVVGVGLDGVMATPSINPNFNTLFLSVAAASSWSVVDSNTMAVPATGPPAVGEFLTTEIRVQCSCQDFLNREGFNLYNTSLKQRYPFTGVQNIDPGSYDAGSSAATRISPSSDYPGASRTFGFIYLNEIYNIPTYSDTATYSDPHLYYFQPKWCKHIYAAFWDLYRKYGMSGSTSYYLPQPNDEPMNEYYREKFEGELQKQTDFLKRNKDFVWWQRYSPALNDLAKHLLYADKYNMVAKTLNFGQLDDLTELQDTNFVLLTFDQFDPLNPAGLPEDTYDGGTYANGELISQPTLILDGGRYSNGELIPPTTYPAFINGGTY