Scaffold Ga0209297_1000887

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000887
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18132
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F007467	Metagenome / Metatranscriptome	350	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F027439	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100088710	F022371	AGGAG	MLCLLELKDIVWVISWFILYSWLILSIIYCAGFIILKLIDYIRKELDL
Ga0209297_100088711	F021063	GGTGG	VRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKNGTVGWWCRASGVKIDNRTLLRKLQENDYALPIGA
Ga0209297_100088712	F003304	AGG	MKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR
Ga0209297_100088719	F007467	GGCGG	MNDKEAWNKFEDGLQDAQSYDEAVAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0209297_100088727	F002149	AGAAG	MTALEYIEESGVPEAMWPNLAEWFGWFEKQGMVGVVEDKDGIAGVALARCIKDGQKADHYVHSEDGENVFVDLTISSKGGKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMSFMRKARV
Ga0209297_10008874	F002826	AGG	MRVESKDRLKWSRDMLLIARDKLAIERDRVSHGHAIDLIQIITMVDAAALIAKEILEEEKGLTQ
Ga0209297_10008875	F004010	AGGAG	MPLGKNVSKNMSELAADNRKKGSERGAGGKPRSRQQMIAIALSAAGKSKPRKFRMRSGS
Ga0209297_10008876	F027439	AGGAG	VKSIYKYARLEVNALAEMLDKNACQPGQLLESNASPLAWIMNQMLYDKFHGHGWVLDLLAGSFVKQKENKQCH
Ga0209297_10008879	F020665	AGGA	MRKRKGKSIKLVKTEEYKAVKIFVDIDDDLYEALAEAGKQHILKDKTACFEYALNKALLELCEEVK