Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000837 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000837 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18830
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (58.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18830

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (58.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F022814	Metagenome	212	Y
F041636	Metagenome	159	Y
F057002	Metagenome	137	Y
F063629	Metagenome	129	N
F079388	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100083711	F004362	N/A	MTNMESRLKNWAWYVTWGVIGPQVDTTCRSFEKNYVPELGNLYADPEPHYEPDHVDGDLIEQAIKGLPLQLRQVLKMRYVSHPYASLNQLAHNARTTPHKLETDLHNAKKRLQHELDKKSKSNHYQSLCKVQAQKNN
Ga0209297_100083713	F022814	AGGA	MKLNSEVVKNLYASLYCCYPFTKWKMPLPEEIEFIVTPDPEVMGTYLYDTGEDYEHTVTISSGRCGHYYTMLTTLAHEMVHMSFHRQEGNKWTQHGKPFRTRCKIVANELGFDPLEL
Ga0209297_100083722	F063629	AGGAG	MNTVVNTPQTSSFDRLMAEFGTIKTLCEKIGVKYVTAYAWKMRNGIPKKWHKSIIEASEGRLTENDLG
Ga0209297_100083726	F079388	N/A	MEKTKVINKKCLEAFNSLSEPVYHPQEYFMLGWNAAIDALSAEFSRKWEMSELEDIDFIVHPEQEPMHDDE
Ga0209297_100083730	F057002	N/A	MRSALTFTKESLHPSDYAGKRFDQALHDKYDPPARKAVTDWMKMKWGLECRENPNVYGVDLIAYREGNLVGFVEVEVRSWSFCHHPTIHIAHRKAKLFQQDRPVLFFALTHDLSHAYWMKAKLVKECPLVEVKNREVPSGEFFFDVPVGHFKYVDLTDPF
Ga0209297_100083733	F041636	N/A	MANLTEKEIEDIVEKVTERVIENVYTSVGRSVVTKLFWTVGVAAIGVVTYLAGVGHIKIG
Ga0209297_10008378	F006502	N/A	MKPQKTTIMIGLLGDKPKMGKKEEGGLLAEDKSSCPLATQDADINKGNMKKAILTANYGEKGDGEGKCKACEYFCTPKEMPDCGLEKTMGYCEIYDFMCNQNNGCDAWEAIGKEEEMEMEDEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000837

Overview

Ecosystem & Geography

Associated Families

Sequences