Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000799 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000799 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19326
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (88.46%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19326

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (88.46%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010601	Metagenome	301	Y
F018508	Metagenome	234	N
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F046244	Metagenome	151	N
F052462	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100079913	F023804	AGGAG	MLETLFRFKCEVEGVTLVCFLEHEPEELNHGEAPDFPACMNLVNAYCDKVDIAHLLMQSIVDHICEEALTQFNSESE
Ga0209297_100079915	F021491	AGGA	MSVQKKIEEIVLGYLKASEGKARIMSPQDIAKLVSEVAHKGAMLGYDSGMKMAQRAHGNELEIAELTVKELTERVKELETQMIASQQ
Ga0209297_100079917	F052462	AGGAG	MTRHIGISVPHRRVDEDDIQTYKRVWVSLTDEQIHKCIAYAKGGCDIEQTAKNIELKLKGLNYD
Ga0209297_100079925	F010601	AGG	MLSQWVNGDLELDQELRAGKVPICIRDDYIVYLEFFRGNLWIHVEIRRWSSGVKKDCLKSIALIENLIGKPIVALIREEDIKLVRFAKSFGWSEKCQISLLDGSKAFIYTNKV
Ga0209297_10007993	F018508	GGAG	MVKKSLKKVVGGLKQPDFPMNTFEVFMNSRLVELSVVKRQHEKRWGINRLIELVDSEFRIKVWRQAERVFEASVSRDEVKLDRAVGGMVKAYAALEAWAVENGVPEMPAIVAVEHEMQDGSVMVVVGTHHDATLYQQFRPDVQNRHIWTMEELELIMDSPVIKDTMKIKALMPCAAMVRLDKDAKEFPLGGATGFDDVKSDELEASSLPKVFDTSKMRKNTANRALEEI
Ga0209297_10007998	F046244	GAG	MIDEERGAMREHIVWLTKELEDTRTKLKVRDELLSELLDPDQLGHAVTNEVRGRIYTLLHLQENN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000799

Overview

Ecosystem & Geography

Associated Families

Sequences