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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027733 Open in IMG/M |
| Scaffold ID | Ga0209297_1000716 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20374 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (88.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002653 | Metagenome | 539 | Y |
| F036205 | Metagenome | 170 | Y |
| F078246 | Metagenome | 116 | Y |
| F097207 | Metagenome / Metatranscriptome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209297_100071619 | F097207 | AGGAGG | MPDIQTALNNALNNQLRNTINDWEKDDMQTTQVKPQGANYGRGTKAFSVTNNVTRATFDFVKKNPNLTSPEICASMERIGYKASSVSSLIAQFAVQGLAERDDRGRYITIVDEYSPLKAKKKTLKIVPKPVEERVKRKYEKRSEGIAALHTDTTDTSLTLPQPKRFVTLVRSKTPDDILKDMTVFQARELYDYLKKMFGG |
| Ga0209297_100071624 | F078246 | AGGA | MPRPKPPEPLIGRQVRMSDRQWIMFNELGGADWLRKLVEKKAPMPKKYYDNELARISNPADATFLKQRKGEIND |
| Ga0209297_100071627 | F002653 | AGGAG | MSYVQGDFSMTEEELERRVEAMSDEEQHHFRLLIHKIVMCYGQGKAQGVFIIGRAEDNVAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN |
| Ga0209297_10007167 | F036205 | AGGAG | MTNKAKAFNTLNTFADSRVKLIQGMKDAGYTTVEACRPIVIEWACTKMEVGKAGFKVHDVTGKVSLITKNPKYETTKTVVRDMMHMIEGTTRRTSSARKEPLDPVAKIIEAFNKLTPAEQRKALKALVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |