Scaffold Ga0209297_1000705

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000705
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20569
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011282	Metagenome	292	Y
F042803	Metagenome	157	Y
F045609	Metagenome	152	Y
F096864	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100070510	F011282	N/A	MKKYKNIVVITGTYINQDGQEKKRYQTIGSVFVDDNDNLKIKMDSMPLVDGGWNGWANCYDLEEKTNTGARDDIPF
Ga0209297_100070515	F042803	GGAG	MLDDGDEGEFITYVIWDEVTVKWSWSAPEDYEMDGYFDIFVFKDGLDITYDIPKLQFKWIEAEVKKYAGYEPPSHQRVASVINGLANNSF
Ga0209297_100070519	F045609	GAGG	MNDRCQANQLLDQHKETHQLSYADTTRALRLTGDYEGDGSARMGEEIPQESERPWENQSINMVVTGLLKHRKTAWISRRR
Ga0209297_10007054	F096864	AGG	MATAKNAKQPARQSVNNRGGDDRYPIPPPPVSRNTPNEDNQVGFLIAFLSLVVVFGLLLPIIGMMYLDILEAKQETKRQQAVVQRLINKAEENK