Scaffold Ga0209297_1000697

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000697
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20721
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.26%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F005090	Metagenome / Metatranscriptome	412	N
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F010836	Metagenome / Metatranscriptome	298	Y
F011075	Metagenome / Metatranscriptome	295	Y
F011392	Metagenome / Metatranscriptome	291	Y
F024788	Metagenome / Metatranscriptome	204	Y
F029655	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100069710	F010084	N/A	MEIDIVEEVIYHLSKNIKTKMGVSSIDGVGVFAIKDINIGEDVFPKWEGDSFMYAISNERLSDIPNEVLELLDMYFINEDCGFKVIRLFKGMNFLFHGTSYCNSAWPNIKDANIDITGIALRDIKAGEEILEWYIKNINLANSK
Ga0209297_100069712	F011075	N/A	LGIIKIENMSSFETHLGIIVGSHLNDAMIEISINPKLAKQRMKFVKALTFFNEDLTKGVTDEYCSWLWDELFENQRWGGPYVKGTDYETK
Ga0209297_100069715	F010836	N/A	MATSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELKDNSDYVDYGKTDPNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGCNLDWNVAYSINGDAYDIDELENGIGYNTALPISKIKAYGLLAEKKAEKLKNEIVDELEALYNDYSDRYGVTAVFSNGETIYHKL
Ga0209297_100069716	F007751	N/A	MNQILELKSVIGKDVSQNQSPTCRARLVSVGKSNCIFESVPSPYNKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0209297_100069726	F029655	N/A	MNKLVFSVNESNCVKFLKKYPMVTHLMVQAKGKDMMSAYKKFLKLKDMNESKLGGRGECIGSVSFGTKTFYKYDWDSCTGWAEVFQFVYNYNKNNK
Ga0209297_100069737	F003542	N/A	MSKVNFDYDLFESKIGYDSLNKQYLIRVYEYLVDSIENYDKPTWSGTMRRMLGSNPKGVNPSSYYSSVRRCLKEIDVCKFDSVKRCMVKGRNWDRFVSDESWNWFIMRTGSCEYSTIIK
Ga0209297_100069738	F011392	N/A	MNLSIKELNELIYSLGITAHKGMFVNKDINESLLEKFYSELNSKIADEAIDEEVESDTYYVSNEEADEDFRSTLKQDAQRYEASHMTTSFPIVDPFTSVSEDYDNHLSKLKQRGYITQALLDYVDKKGAVSHGDLETYYKIITGGSNSFSHILDNLRTPYKNRKTQRYIAKEGKRYSDAKYIIKVANPSNWVIADCR
Ga0209297_100069739	F005090	N/A	MKKKMKFVWCGVNFELPAECLRTTDYWGKKLDNPYISIGRKECPAIAKQFMKAKYPKLLVWGSSQTFANGNSASVDVCNADGSDLDMGSKEWNEINSFIRQMCGGKYDGWSESYEYGEPGKTDNGTKLEFGTKYLSVNNKAPFGTWPDVVRMLKGMMAGEYVWGPLSLEKAIEKVKDYKVTEPTIKKALELI
Ga0209297_100069740	F005630	N/A	MSKNLYEVDGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGINSVDELYDFVIN
Ga0209297_100069745	F024788	N/A	MSLEEKYQKLNEQRFATIVILCNVLDTEKGVTDHIKSAICASLINMLERSMNDEDEPLINLINNSIDNFCAVVEAKKGIENYRDTLTETVDIAKKIVSKINEKAKRIKEGEDILKGICLN