Scaffold Ga0209297_1000678

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000678
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21066
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F020665	Metagenome / Metatranscriptome	222	Y
F024501	Metagenome	205	Y
F033721	Metagenome / Metatranscriptome	176	Y
F058800	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100067816	F002826	AGG	MRVESKDRLKWSRDMLLIARDKLAIERDRVSHGHAIDLIQIITMVDAAALIAKEVLEEE
Ga0209297_100067821	F020665	AGGA	MRKRKGKSIKLVKTEEYKAVKIFVDVDDDLYEALAEAGKQHILKDKTACFEYALNKALLELCEEVK
Ga0209297_100067823	F003304	AGG	MKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIKEDEAKLVELGR
Ga0209297_100067824	F058800	N/A	MKLALSWLLYFLGDIISCTLLRMGLGYGLYKTLMLWSVELDDKFDVWKEVKPSGRGKK
Ga0209297_100067825	F033721	AGAAG	MMWIKKEFDDDGRPEWAVYIDESGEGREEDWSHYDTFETRDEAIKGCRSVTWEDYDCSDK
Ga0209297_100067826	F002009	AGGAGG	MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRTLFVLAQIKKEVPRL
Ga0209297_100067838	F002149	N/A	MNAVEYIEQSGVPEAMWPNLAEWFGWFERQGMVGIVRDKDGIAGVALARCIKDGQQPNHYVHSEDGENVFVDLTISSKGAKSLGCLLLLLAERFGPRKRITFNRSGKPRSYDYMSFMRKALR
Ga0209297_10006785	F024501	N/A	MTHPKQLDEVGITESYLRKMAKKEGVTYKRAVQIAMEQWGDYSLKLINKLVADDIKERRR
Ga0209297_10006789	F003962	AGG	LQSDREQLKASHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSFEVFEAQWNGLTEQVKRLSGFFESHQKALQSLQDSIPDDFDTDEVDDES