Scaffold Ga0209297_1000665

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000665
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21317
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F004950	Metagenome	417	Y
F057167	Metagenome / Metatranscriptome	136	N
F060718	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10006651	F060718	N/A	MIVLNIMNWIGLTILKFLIVSLLFGAMGFSIIFMYAMQYLTQALHYVDKNVN
Ga0209297_100066522	F004950	AGGA	LGKGSTRRPLLISEQEAKDNWDKIFKKDYEYELNKSTGEVEKRFKEGTSKPNGEQFGD
Ga0209297_100066531	F057167	GGAG	MNVELDYITEQLHAIDINLEDVNRGMTPSGYLTINSYLEDMRYRLSEITNEILTMEV
Ga0209297_10006655	F002037	N/A	MNKIYIVFIIVMAGLAVWGTEKALADTTTIFAPDGTVTVCTRGKDMIICV
Ga0209297_10006659	F003066	AGGA	MKKKPLAFLYEEYDVKSGDLLKSYLWSFHPNQLSYLNDLKNTTHHIKITPLIAGEPIEEYKGISKYDSKKLVEAYGGD