Scaffold Ga0209297_1000598

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000598
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22602
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (67.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F012854	Metagenome / Metatranscriptome	276	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F027764	Metagenome	193	Y
F029048	Metagenome / Metatranscriptome	189	Y
F045569	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100059812	F029048	AGGAG	MLSQIKDVIGDKARISTEPFGVDEERQLIAFEVNDLAAVLQDVIRVCADCCLNTTDREAILELLN
Ga0209297_100059814	F017287	AGG	MDIRRVFEGEAPCDKCDQAQTCQDNEWACRAFSFYVLHGVFEDYTARMPSREMFIKIFKEDDKALKNYLKAIREKK
Ga0209297_100059815	F027764	GGA	MNIQIEIVKEHEDGSADALVHFDAEGLGILVEAGILSILRQYIDQQKKAAKKKK
Ga0209297_10005982	F017107	AGG	MTDYSENYLRIQMLLRCYHNATLKKQYEKATLIANDLAEETIKLEFSTYDQVRKQWLT
Ga0209297_100059821	F045569	N/A	VSIFVDIDPVKFGVTWQKVEAMESEVAELRKDVKQLLELANKGRGGLWAGMMVVSALSAFIGFLSHYITGK
Ga0209297_100059823	F012854	GGAG	MINLHPSIFKLNPTVTHIVSDVAYDAEGNEVAYDLQAVTAQAEADAQAAIDTRASALAKLSKLGLTEDEIKALL
Ga0209297_10005987	F007848	GGA	MKDFIGSCSLGVLFAAMFCYGIPAKAQQVQMTDSRGYNLGTVQINGNTAQFVNPMGITTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPPSPSTPSSPRVMQ
Ga0209297_10005989	F007166	GGA	MGELNQLMLEMEERLEIALQNMEFGTELAQDDIDVIRAACGKPNRNVLLKDVFEDFGNVFGGQNATK