Scaffold Ga0209297_1000573

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000573
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23058
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011665	Metagenome / Metatranscriptome	288	Y
F015338	Metagenome / Metatranscriptome	255	Y
F026214	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100057311	F011665	N/A	MQNSINTTPISQYVQLLRAAEQSRQTEVKIPIQQARLLNLALAEIMDKMNQDYETMFNQLKQSVETDVVNIQLDGGNLSEEN
Ga0209297_100057324	F026214	AGGA	MAKNYKTFSYLESRPDVVKIFEDLEAFHDFCRIELRKFDPADLYRKDTKSYGAYLASKRPRKPYQGSKPWNKNKFNKS
Ga0209297_10005736	F015338	AGGA	MALKNGKPNPLNFFKLRRVEFACPHFKYMTIDRYHPAQVRNIDQWIKSNLNNRYYLGKHVVLDSQNTIVYHLRIGFESEKEISFFTIACPHIHTR