Scaffold Ga0209297_1000477

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000477
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25603
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (11.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F022861	Metagenome / Metatranscriptome	212	Y
F024031	Metagenome / Metatranscriptome	207	N
F060624	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100047729	F000716	N/A	MYIMEKLKQNVKDYQLNVSKTHTQYEQDGYNQYQNYLYKRALYGLNSLTEEELSTMCSKKKQRIINVYKRAQVVLNTLKQQATINYSNFLFKTLFPNSPITQFLLSETEIDEKFRNTLTFKDLNISKEQIISIFMVEGILPRNFLSLEVPQNQLPRLKNDKA
Ga0209297_100047738	F022861	N/A	MKAVCIDSSNKPKKIPDSEWITEGETYTITRIVRMGLEKNKFGVLLKEIQLSSQSFPYELYDAARFLPLDILASMKKEEEVTVKEADLELI
Ga0209297_10004775	F024031	N/A	MSQFKTLRGRRILIEVPVKKESTIKLSEKDNDSMMYEAMKQWNRLTIYAVGDKVEDVVAGDVVYIAVGQLEHAEKVDIDGSVKLMLNEMDIAIIW
Ga0209297_100047752	F060624	AGAAGG	MFLPVEFKDKDGSYYEQLNVTHITRTSFINRMNPDAGSKIHMRTGEVLTTSVPYDILSTAIDECWKSAASMIMFTILAEKAKILSAKDLDLEDLEPSASTE