Scaffold Ga0209297_1000354

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000354
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30028
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (13.73%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y
F046371	Metagenome / Metatranscriptome	151	N
F049635	Metagenome / Metatranscriptome	146	N
F071242	Metagenome / Metatranscriptome	122	Y
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100035410	F082704	N/A	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIQFSMKFYVDESKVKLQEQTST
Ga0209297_100035411	F019140	N/A	MKPIPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGTMMTKNKEDGTEQN
Ga0209297_100035415	F012871	GGA	MLRSASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMFAEDLHNFKKGKYTVIEIRAVSLMRWLEESKQITADTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ
Ga0209297_100035420	F049635	N/A	MNKAIYKTPFGRLVKVNFKTMANFKNVLRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEENE
Ga0209297_100035423	F045753	N/A	MYCPKITYCFSDDDIRTLNERIKAIANNYNDDQTGWFEVNEEQHLVFIDDLDNMYTINLRGRFFCSDDPEFDLDFVTLEKDGISFSFDVNIFDDHI
Ga0209297_100035426	F041777	N/A	MKKQLLYIALLFAAMLIAGTIDEQTRQLEQQPNHYTK
Ga0209297_100035429	F023350	N/A	LTLDKYIEGNYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRKIK
Ga0209297_100035435	F046371	N/A	MSENKLNFLRSQIAMFHPEWSKEQVHMEAIRIYNEANTIDDDDESCLYCGS
Ga0209297_100035440	F036240	AGAAG	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLQIKGQSINISVFAKGKAGQYFLFREKGVNGTQKSQGAPYSFKRGSGSKPAKGQMSPMQQAIYDWMSIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWNAFGYAYENIWDEYEAKVVAAYGKDFNAAIENQLNDIK
Ga0209297_100035441	F028175	N/A	MAITINDQPYQYTPVGQRLMLVCSSTNVANAGFRFVFDFGSFQVNVQPNAASKGILDLAPIFRESLFHDASLITTTNDVDPKSVAFISCTIKEGWLVDGVFTISGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGITKYLMSERNVDTHKWSEATARGLSSNFVYIPTRLADWGVMYTPSATALLADSDFDIAVFSTYDNNDTLIDTVNVNLSNANNLVNVIGANPSNLINGGLDFTNVKYYTIQIGKEIAFPVYTPASRLYCFYLVPDDCRFDNVRLGWTNTVGGVDYFNFTKKSELSFNYDRKQYQKVVGSYNASSFGFDTYDRGVTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVYIINDDGTMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0209297_100035443	F071242	N/A	MEQISKEHLQSKASAMVACLEFIKLNVKSESNYGRIANGKNKLAKWLCRLHNCTPIYVNVAFWIFIIYIIFF
Ga0209297_10003545	F027518	N/A	VNTEIEIALIHEQLQGMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGIVGGLIVQLILKMI
Ga0209297_10003549	F021113	N/A	MDKREYQPDAVIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNNGEYDRLLQEEIDLYGTYRRYEDAQLTAKTTYRTRRDTILVLDTIYKVDVIRLVNSCDSVIASDSLVIDNLQEQINIKDEKTNNLEETVVAYEQKTNLLSEQINTLDADKKKLEKQKKRRNHALVFSSSVAILSTFVLAILL