Scaffold Ga0209297_1000336

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000336
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31078
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F026860	Metagenome	196	Y
F074557	Metagenome / Metatranscriptome	119	Y
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100033610	F082694	N/A	MGTISARQILEAVIASHLSDQTELTGVSIYTGDGADTNVLPKLIVLCDSARTPNDLPQGLGNYMCGTRVTIFSSADDNTLVEHRARCAAVAGAMQDLTAIKAKFVAGGDAACYDVTPQSEDEGVNERSWASVMSYDILIVVNPQA
Ga0209297_100033612	F085382	N/A	MSIYDTFLPDFQGLLADIGVPATVGSDLFLVGLSRPMNTPKFDSGGFTDQKMWTVRFAAATAPWTASDGRVGGQVATLASGVPIAALGEGKKLTVNGQVLRIKGQSYKKTSAVIELDCIDDNQ
Ga0209297_100033617	F076091	N/A	MLGIYVGVDEDTLLQYKAEALADLGKAVTSYSDSGTSVNKQFGMPPAARIQEINFALSRIDSSRYGGAHTSVQINWSSRVDL
Ga0209297_100033626	F003714	N/A	MPDANFQFVQSVTFAGRVIPLTKPIAAFNARRLQRILPVIAALNAAGKSQEEAAKFLGTTVGTLRKWLAITDTPWVNLKRRGKYKTNA
Ga0209297_100033631	F101160	AGG	MTTPYNSHHSVNDMNDLIDKYVPVREAALQEHYMKAAETRALLKRLGCWPDKPSRSPETRGKKPKNGKLASEIGRDAYHWAYANKATYTEAAERFRVSSDAIHSYRQYRKLPKLRTL
Ga0209297_100033633	F074557	N/A	MTLILALSAALLVSEAIPEAVVQAVEQVESSGRGSKTPNGDGGKAIGCLQWHSAAWSDCSAVRLKAGLAVYPYSDAKAPIRAREYARTWLTVLKVRLSTQLGRQPFPGEVWLAWNLGWSGFKRYGFQWADVPPAKFAKARQVNTLAWGLLKEDQSAR
Ga0209297_100033634	F026860	GGAG	MIKTAAIIERIMRELNNDQSIAPPPAGFFTVEQIRTELDMAHTRNASSRAYDLFRRGILERKAHKFKVATGQCHKAYVYKPIAPYQSIREASDGLFHYQADKVPNGWVRIVDYVFTHEISEAAVRSKVARASLKPKYWKTPRGIIGLHLNAFYKKSDLDRVMRKR