Scaffold Ga0209297_1000318

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000318
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32251
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001530	Metagenome / Metatranscriptome	676	Y
F002098	Metagenome / Metatranscriptome	593	Y
F022373	Metagenome	214	Y
F082232	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100031816	F082232	GAGG	MKTTDNWMSEEGIPHKNGFVRFYLIGFEEDVHGYLGWFDMTDWDEGWKKVWEAAEKRRPNEAFEVLRHDQLQDLSRNVQYAFEEALEDKDETTWLWWIRHNRLKEEQLNPKQT
Ga0209297_10003182	F022373	GGAG	MRAKAVLEFTYPADEDNLLFALKGPEMYKALTNIKMAITGEFTHKADMVIVLARVRDLTNQILADLGD
Ga0209297_100031833	F001530	N/A	MQITKEFLETEIRDLETETQKAQTFVTQAQATIQAYKMLINRLDAPEQQHDDAV
Ga0209297_100031841	F002098	AGGAG	MAYTRSADGVAKQGKTKGKNLGDSGPTVAIMNGPAKHTVGKLNKDMKTMGRGLAKIANQKRG