NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000318

Scaffold Ga0209297_1000318


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000318 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32251
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001530Metagenome / Metatranscriptome676Y
F002098Metagenome / Metatranscriptome593Y
F022373Metagenome214Y
F082232Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100031816F082232GAGGMKTTDNWMSEEGIPHKNGFVRFYLIGFEEDVHGYLGWFDMTDWDEGWKKVWEAAEKRRPNEAFEVLRHDQLQDLSRNVQYAFEEALEDKDETTWLWWIRHNRLKEEQLNPKQT
Ga0209297_10003182F022373GGAGMRAKAVLEFTYPADEDNLLFALKGPEMYKALTNIKMAITGEFTHKADMVIVLARVRDLTNQILADLGD
Ga0209297_100031833F001530N/AMQITKEFLETEIRDLETETQKAQTFVTQAQATIQAYKMLINRLDAPEQQHDDAV
Ga0209297_100031841F002098AGGAGMAYTRSADGVAKQGKTKGKNLGDSGPTVAIMNGPAKHTVGKLNKDMKTMGRGLAKIANQKRG

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