Scaffold Ga0209297_1000259

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000259
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35601
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (81.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F060589	Metagenome	132	Y
F067363	Metagenome	125	Y
F086581	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100025938	F067363	N/A	MKIKKFDQALHDKYDPPARKAVSDWIQMKWGLQAIDNPDIYGTDLIIYRNGNPVGSAEVEVRQWSPVCPFYTIHVPVRKVEMLEVPNTLFFALTHDMSHAYLIRGNEALKYNQVEMRDATKHEFYYDVPKHLFKYIDLTQPF
Ga0209297_100025941	F060589	N/A	MDEQKHKHRCAVRQLIMWRRIWGLKAFREYMHKHKLDWKLVRDFEDQWVKGNRADEKGEW
Ga0209297_100025951	F002539	AGGAG	MNNEHIWTVSGTDITIRWRLAGWTPPSELQEYIDKWAYWQNLPLRKLDDQAKQQYEAVLRKAKVARIK
Ga0209297_100025957	F086581	AGG	MSFELDPVKYGILWNTVENNEKQLELMSQKIDKMESKLEELVALANQSRGGFWVGMAIVSAISGIVGFIGSHFSGK