Scaffold Ga0209297_1000254

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000254
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36075
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (82.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F025942	Metagenome	199	N
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F056414	Metagenome	137	Y
F078415	Metagenome	116	N
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10002542	F039985	GGA	MLNLSNNSGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIAAGMRDWQPDETLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYSEAAKAAGISDGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPLGMDADGGEFVEPEPAPAPVRKAAKPAPAPVMDDEEFF
Ga0209297_100025430	F078415	N/A	VRWLIPIVLLSFVYGATVKRECSVSDFVNIAYSVHDSKERHDRILEWLDDSGQVCTKEQLVLIYTNLAQVLGAADTMRVRTKIDKLYERAK
Ga0209297_100025431	F025942	N/A	MNEPNESWLAKNIQPVTVAFLLFSYFFFALLSVFNLETRGAYVDLLGQAMIIVITAIFAGKTAEKIVDIRTKGNTNGT
Ga0209297_100025439	F017969	AGGAG	MIHILYIPVLFVCMNGNCEFMQAQTSYKSEQQCRASIDVQKENLQKMALKGGQMVTLIEGTCITLKGGML
Ga0209297_100025440	F079788	GGAG	MDTDDEIESWASIVLGLIATLFFFIGVVAVIVSACMAWGYYTYEPLCGTVAALFTQECKL
Ga0209297_100025441	F027776	AGGAG	MMNPLEIEIKRTVFAHLPAVGNIGLISREELATMLHTACTDAALAGWARGTETAQKRLDQELEILRQELKAIQTELAYAKAN
Ga0209297_100025443	F056414	GGAG	MKLTDYQRNQLKAAACFGGDQIDMVAASLQRENPDAFLRESELHQRNFYHEPKSYGSPVPHRSYVQRLVVRRREQDNEQRQVMDQNHYLQQTFQIGVGA
Ga0209297_10002545	F044360	AGGA	MASKKLLETDVYPSDPFKVWNQALAVEVELAKLEHERVYGIDRVIGLVDAEFRRKFAAQRERIAEAVQARDEERLERASKGLVAAYKALTKWAEGVGLERMPKIDCMEHRMQDGSLLVVVRDRTMATWYEQFRKEPGARSIWTLAELETVMNGPTLSQVRGIKAALPGTTMVPVEATGSSGFEDMKNDIDISKPFRGTKLFDTAEAEVHAQGGKRGR