Scaffold Ga0209297_1000194

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000194
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41081
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (87.32%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F033006	Metagenome / Metatranscriptome	178	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100019412	F001706	AGG	MNLHQIQAHPEYVEGCFGCKIGTLELGTGDATRDISDKKWTSELQAYRDARAQGIQPAGTTRAHVEAAYEASATLGKAYNSETMPKTKDINKKSTEVLKELGAI
Ga0209297_100019419	F033006	N/A	MEWMENGFFDHLDKFANSLGYENFAIALPLAMVPWKSPEDRDVFIMTLTGEGVKGGESSTFNPLAVK
Ga0209297_10001944	F001599	AGGTGG	MQETVSIAWCDNGNVDGKFMHGVTDVLLKSGITFDTSLRSQGNQIARQREKVIRYWYEKNKSDWLLWVDSDVVISVDKFKLLWDNKDAEKRPIVTGVYFTTDTPEDPLMVPLPTVFKFAEKPGTIGIQRIHPLPENEFIQVGAAGMGFVLMHKNAITKILETIPGAPLFTEVGVDKSFMGEDIYFFALCDKAEVPVWCHTGATVPHMKRFSFDEHYYKAFFGGNQAQKKSNLIVPKR
Ga0209297_100019440	F003658	AGGA	MFDLYNLENPTFACICGCLMFEITVMWDVESREVGWYDLRQRCKECGSESTAPTPMDWDT
Ga0209297_100019443	F008237	AGG	MIEWERIERWDYVVDSVATEYHRKFEIDFDDIRQSLYQWFIEHPNKLNEWEAIGEKDAKNLIYRSLRNQALDYCQRWKAKSGGYETSDLFYYESDMVEALLPSVLRGDFNLTAQLNLGRPGRPSAPNEGGNLMAMMIEVDFAFWKLSKDDRKLLFLRYAEAMHFDDIAKEMELGSEDTARMRNKRAIKKLIHKIGGFKPYRDEDTEPQDSLES
Ga0209297_100019446	F012770	GGA	LNEFDPNEPPESYCHECDTQFDNSFDLVDHTLDEDEEFDPYYILPNGMKLLLGSLLRFMYNHSNEPEQIELIAQSTYVTLFAAEMGFDMIDELVEDMVVKSAMQNLEQNIEKLLSKDTDEEGGA
Ga0209297_100019449	F079979	GGA	MIREEEDDTMQDMRALIVFEIKQEVEKLLQKIEDAKVPVTDEWTDGVNAGLGWAQRILRKDKSAT