Scaffold Ga0209297_1000193

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000193
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41193
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (61.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023853	Metagenome	208	Y
F030432	Metagenome	185	Y
F090400	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100019312	F090400	GGAGG	MNSISPHSISPLSINSLSHNSSITLDDTYLNNLFKNINRSDYVKRYEVIEATEDILALSVAWKRLRDTKNESIQTGITTLLDDNLFRKIEEPDRIRANEIRDYFSKKIMLWTLKSVKLSAYRQDLNKFIHGDGKKVTEELLPLIYRLPEFYEYDVQFDQFKREVNVEITNFGKIDSVKKITTLTPVTSFYKTNKRVKHFEYWLKDNNDNAHLITIEPKNPLKHIWDKIFTNGQLRIEATCYPKKYDELQYFQLLNWSVA
Ga0209297_100019325	F023853	N/A	MAMIIEHYDYAVGWENTKPGWHECTVHVKHLDKYNEIVKWLETNIGKHERHCRWGITDDDLISFKFRYEKDYILFTLRWS
Ga0209297_100019327	F030432	N/A	MNQLFPITSVQNDKFLVSWPKWENIRQFDTKKRLLAVLFADIGSDEVGIAIMAGVLSGGELDVMWINSNTWAQDVNGDYARYLEDMYDIKGVVFNSEDEATKFQDYLEKKYIWKTLQA