Scaffold Ga0209297_1000168

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000168
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44159
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (29.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056430	Metagenome	137	Y
F058814	Metagenome	134	Y
F066566	Metagenome / Metatranscriptome	126	N
F068461	Metagenome	124	Y
F099284	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100016815	F066566	N/A	MKISNNNKKIIIFGAVLFSIILALYIFNLQKYKTNCKSLENIDKIELETRLRELSDKNEQLAKQIENDAVAIKHAQNQINEFKVKCKNCTYHLSTNWEN
Ga0209297_100016833	F056430	N/A	MNIKIFKTREQFKQYANELIDDNFWDIKNCSPFKSNPNIPYVAYARYIKKTIHGEDASELRGFKPSQNQKITDRLQEELIKLLTKDAEEIVLENDLFQVVVEKSDGNLQTAIIRLIDYSANALITHEKKHIDPSENIFLYINDHEVYLSKRQTIKINQAIQDKLDEYWAENQTEDEKEATRAEKLWEMNEGR
Ga0209297_100016840	F099284	N/A	MKETKTAYILAKIKIKGFVKAKNINQLALKLDIKPENLRHIIDAIEVANAVDDKARHNYHDYYFRGKGKKKKGTLILCYKWADETKSVLSDKMNEILGVK
Ga0209297_100016855	F058814	N/A	MLTKENGAKVYSIIYLLAFLFYPMFIWIDIFTPLKKETFEYLGKFLFYAGSGFFAIIGLRNINLLTGLLKK
Ga0209297_10001687	F068461	GGA	MYKLFLLIALIAIFLFKQSHDAKKYKVEFENKLEFNSKKLHAVIADVWNINN