Scaffold Ga0209297_1000097

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000097
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59089
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (60.98%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F033430	Metagenome	177	Y
F045098	Metagenome	153	N
F049634	Metagenome	146	Y
F052597	Metagenome / Metatranscriptome	142	N
F075612	Metagenome	118	Y
F084240	Metagenome	112	Y
F090402	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_1000097122	F033430	AGGA	MDEQIEYKTSENKQDWFINHVLTKEQVAQLIENKLQRAKVFQEATKKANKLAGIA
Ga0209297_100009722	F090402	AGGA	MMISVFATLFFGYILATKDYKDSPKWMYYIDGLVFAINFAIVFKYLTDMIGF
Ga0209297_100009738	F001009	GAG	MASNLNSEFNYRYQVIGSTPWEKIKTLQGFYVGRTRAAVLEECAELKYQAKLEEMKHLKTVPALPHILLNLQAEILELESHLEDQRHAFELNRKEIKILEKYMAELYAEVEPTRLKHEDGTPYTDDEMFEANANYEFTVTVGREIQSEIIALGRPSPAKLLNAMSNPQTLNALMQIGLVPQGTVLLEQKDIMLELTNQSPSDNSIQTNEVQTIESAANENKTT
Ga0209297_100009739	F045098	N/A	MTSRELQQMYQQWCQGNDNYGHRWLDFVELATRYFKQPESEVIRELQKHYWFVKNNK
Ga0209297_100009740	F084240	AGGAG	MSWFKHKPRTKTPPKLYPHYSSPIAEKILKETKLEVTGVKAKLSEQEKKKK
Ga0209297_100009759	F075612	AGGA	MAIVFENGINIGGGIDIGATPPSGLVLNLDASNYSAMPVDGTTIAGEGGYTITTYNSGGSMSWDPAEGGIFRKTVPTGTDFLTFGPDYSSTSQAYTVMMVYRSQPSTAGRLLNANSAAPDWLLGLWDSPSYVQNVFYNGSTFVGATSAADNNWQFIWATYNGNSGSPFSQSYVANSTIPTTTAGTDTSGNGFQGLRLFGRYDSPTASSENPTSDVGLVKVWNKVLTLSQIQAQWTAYKTRFGY
Ga0209297_100009761	F052597	AGG	MNLNLSTFRRSFNPRREFNPADRKDLLEFKFFKKHGKWKTGCPFFLEDPFVEIPAMCENKFTAYMLEKMK
Ga0209297_100009773	F049634	N/A	MILYITNKARTVFLPYEEGMIEWLHENYPFSKYRIEEYEK