Scaffold Ga0209297_1000092

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000092
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61414
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (81.19%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F011482	Metagenome / Metatranscriptome	290	Y
F014841	Metagenome / Metatranscriptome	259	Y
F027488	Metagenome	194	N
F041730	Metagenome	159	Y
F054812	Metagenome / Metatranscriptome	139	Y
F068570	Metagenome	124	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100009231	F014841	N/A	MSEENKRPSLIDDALAEIGRIAFLDPAICTGWVLVSEWMGEGEKEYWTLTLADDDNPDWRHKGLVHHALATWEANDDIGFKDDPKD
Ga0209297_100009243	F103142	GGAGG	MSLDYKGFEWGNRITSDEDSVDRFLHEGLVPESPSIGDLHGAAEWLATYAAETAEDAQGWANVVAFLILTAESKQKRSAVAQAKREFAKEKGIPVSQVRINRNY
Ga0209297_100009253	F054812	GGAG	MDTNEVNQKFDDIIQPKVINQIVKQRREPAKFPELRYLWGITGLATFALLMLAAIVSTFLEGL
Ga0209297_10000927	F041730	AGGAG	MALPTSLSTATIVGTYVDLIGNPVRGSLTFAPQTILKETTQNIIIMPVHIVKTLDATGSFTITLPVTSDTDVAPQPFIYDVTENFSGGREFQVALPLSVAGTTQNLADLLPAVDSTTAASYVTTDQYQALLTRYTNAEGIRVIVIDAEDYEANAQVYAAAATAAANELASFTVKSLLFMG
Ga0209297_100009273	F027488	GGAGG	VSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQKMLAAKGRCSIEYVRKVINQMVEEGHIKIISKGNSRGKATTYQLLWKKLPNSVGEALPIEDDELPNSDTPHSPTLEVSLPNSTPYHPSYTSVLSTTKSDETAVAVVALSEVVAKRWWEKQRVKPLGKGAWHSLLQITKAAEVRGYSEEQIELALDYIGTVPTMRQMDLVLRGVGVKTKHESGAIRAIELSEKLRNESS
Ga0209297_100009277	F011482	GGA	MAAEEIQPTLGEVMRRLDDLTMEVKQMNLNVGQTYLRKDVYDADTERFAQAMDHITDRLEKMESRSEWVIRTVGALFITTVVGASMYLGQSIGI
Ga0209297_100009282	F006261	GAGG	MAVLSSGYTTTEPIQIANAGVWSFTAVQSPTIRVTQLRVQQPLNSSVVESYGVFKPLGASKTVVVATSIYGIDGSYEFTTQGETEWAALYPVLTYQGILHVHDPLGRQKYVRFVDRTWTEVGDINNLIRNAKVNYFEVEAP
Ga0209297_100009291	F068570	GGA	MEETQQPMSSSDVGNATGSSSKVQRVRGVSAAPAVNPKINQDEFVSALDELVGVWKVQDGCSVRRITNELPEPARTKFKEALMNEKINSARLVELLATFDIAVGSDVMRRHRRRLFGKDGCKCPIES
Ga0209297_100009294	F008607	AGGAG	MADAIYSKVAEFMTDSVVFTAKTSVDKYNKPTFSGDTTVVGRLIYDTVKSKDVQGIEVVDVGRFITKGPATTITVSHKMVIGADTFTVNAVDNIADENGAHHTVIRFGR