Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000089 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000089 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63416
Total Scaffold Genes	107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	71 (66.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

63416

Total Scaffold Genes

107 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

71 (66.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014736	Metagenome	260	Y
F016150	Metagenome / Metatranscriptome	249	Y
F036593	Metagenome / Metatranscriptome	169	Y
F044494	Metagenome / Metatranscriptome	154	Y
F058149	Metagenome / Metatranscriptome	135	N
F070115	Metagenome	123	N
F077308	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100008918	F014736	GGAG	MNTPIAPDSLIKMWCDPRFQMLAVVDKLLDGDKTWSGFEYTYHPIDPVKYRPVAEQVRKALEALKKEYGVEE
Ga0209297_100008920	F036593	AGG	MIQLNFNIVNPRRTNKVWNILWSKYGSITKNKAWEFNGYRTGHIINIEFQLTFQSDHAGARLMLGLFGYEVELDFYDTRHWNYDQNTWESYK
Ga0209297_100008923	F077308	N/A	MFHIKRFIDRVAVIEGRQGKDVVIPLSDARSLRDELAKLLIDHYEVTEGKKNTSEVIEIEVIGGKF
Ga0209297_100008926	F016150	GAGG	MTEEKKKNPIAMALEAKKKNAMANSGLGKAPKSKGPKANSKGFGGASVVRRAGRGG
Ga0209297_100008930	F058149	AGGA	MFTPDFYIEMFQTSKRMATNQIFKDERLNKVANDFIDAQTIFAKMMAKNTIEMLSYTVDSMNKTIYSQGEDETVKAKTAKK
Ga0209297_100008970	F044494	AGG	MKFKANAISTLYFKVSVKKRPYSNEEICLLIAASDYTKLNAKDKVMLGKTLYFRELPLNTEQSIIDWHVENITKVNNYSVSQVL
Ga0209297_100008985	F070115	N/A	MVYIEMVMSKFTHKTERYFGSKVNIHTVSWKGQDDIDTKEIKKWCKKNYGNSGYDDETGSNRWVDNIKQCEIMLTRDEDLTMFLLRWE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000089

Overview

Ecosystem & Geography

Associated Families

Sequences