NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000086

Scaffold Ga0209297_1000086


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000086 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64697
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (83.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F002286Metagenome574Y
F006696Metagenome366Y
F012101Metagenome283Y
F018699Metagenome233Y
F023542Metagenome209Y
F024973Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100008641F023542N/AMDILEIAIKAAGGTGRLAYILDVKQNVVSNWRQRGVPKGWKQVLRYKFVKQIAEAEKLG
Ga0209297_100008650F006696GGAMRFLKFLKDYYRELTPAEVIQRELACAHLDRLEAEAAVEYAAAVLDMNMNRIERLNTRLGEYK
Ga0209297_100008667F018699AGAAGGMATKRDYKKEYKQDIKTGKSGPDSDQHERQRARRAYDAKGVDRAGKDIDHIKPLRKGGKSTPGNLRLRSKSANQGDNK
Ga0209297_100008671F002286GAGMAYSQKIIDMVASSPKTPGNQLGRWAIHLNFPVTKIAYALGVTRQTVYNWFEGKDVFVAYQNRVDLLLSIMSTSATANEAWRRICKAYNLNP
Ga0209297_100008679F012101GGAMAQKNVVAPKMPAATGDKYDPALINQLTNILRLYFNQLDNPAPMTASTQRNGTDIIAGLSFFPTGNTTTPSLPTEADLAYLRVGDIYYDTSASNVLKVKT
Ga0209297_10000868F000961N/AMNAPEIDPVRYGVLWQKVQDYERRFDEMSAKIDKLETNIDKLVEIANQGKGSFYAGMVMVSAIGSILGYLSHWVGKN
Ga0209297_100008682F024973GAGMIWTLVLVTGINMNSILVVGYFEYEAACQKAAKDWRDLGYKVGCVQTVKK
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